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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: CEF1_SCHPO (P39964)

Summary

This is the summary of UniProt entry CEF1_SCHPO (P39964).

Description: Pre-mRNA-splicing factor cdc5
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (NCBI taxonomy ID 284812)
Length: 757 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam Myb_DNA-binding 6 52
Pfam Myb_DNA-binding 58 102
coiled_coil n/a 91 115
disorder n/a 115 122
disorder n/a 126 141
disorder n/a 145 195
disorder n/a 220 224
disorder n/a 232 234
disorder n/a 236 320
coiled_coil n/a 289 309
disorder n/a 323 328
disorder n/a 330 450
Pfam Myb_Cef 411 619
low_complexity n/a 461 478
disorder n/a 481 489
disorder n/a 492 505
disorder n/a 507 518
disorder n/a 533 534
disorder n/a 542 549
disorder n/a 551 552
disorder n/a 584 586
disorder n/a 588 589
low_complexity n/a 644 654
coiled_coil n/a 658 678

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P39964. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVVLKGGAWK NTEDEILKAA VSKYGKNQWA RISSLLVRKT PKQCKARWYE
50
51
WIDPSIKKTE WSREEDEKLL HLAKLLPTQW RTIAPIVGRT ATQCLERYQK
100
101
LLDDLEAKEN EQLGLISGEG AEAAAPVNDP NSRLRFGEAE PNLETLPALP
150
151
DAIDMDEDEK EMLSEARARL ANTQGKKAKR KDREKQLELT RRLSHLQKRR
200
201
ELKAAGINIK LFRRKKNEMD YNASIPFEKK PAIGFYDTSE EDRQNFREKR
250
251
EADQKIIENG IRNNEMESEG RKFGHFEKPK PIDRVKKPNK DAQEEKMRRL
300
301
AEAEQMSKRR KLNLPSPTVS QDELDKVVKL GFAGDRARAM TDTTPDANYS
350
351
TNLLGKYTQI ERATPLRTPI SGELEGREDS VTIEVRNQLM RNREQSSLLG
400
401
QESIPLQPGG TGYTGVTPSH AANGSALAAP QATPFRTPRD TFSINAAAER
450
451
AGRLASEREN KIRLKALREL LAKLPKPKND YELMEPRFAD ETDVEATVGV
500
501
LEEDATDRER RIQERIAEKE RLAKARRSQV IQRDLIRPSV TQPEKWKRSL
550
551
ENEDPTANVL LKEMIALISS DAINYPFGNS KVKGTANKVP DLSNEEIERC
600
601
RLLLKKEIGQ LESDDYIQFE KEFLETYSAL HNTSSLLPGL VIYEEDDEDV
650
651
EAAEKFYTND IQRDLAKKAL ECNKLENRVY DLVRSSYEQR NFLIKKISHA
700
701
WKALQTERKN LTCYEFLYNQ ERLALPNRLE AAEIELSKMQ QIEAYAQQDY
750
751
ARVTGQN                                               
757
 

Show the unformatted sequence.

Checksums:
CRC64:9FCA639A2F9A9E84
MD5:f47fed36629ca88f9a012474c0febc80

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Myb_Cef 502 - 619 3JB9 W 502 - 619 Show 3D Structure View in InterPro
Myb_DNA-binding 58 - 102 3JB9 W 58 - 102 Show 3D Structure View in InterPro
8 - 52 3JB9 W 8 - 52 Show 3D Structure View in InterPro
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The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;