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8  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RNT1_YEAST (Q02555)

Summary

This is the summary of UniProt entry RNT1_YEAST (Q02555).

Description: Ribonuclease 3 EC=3.1.26.3
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
Length: 471 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 1 29
Pfam RNase_3_N 44 152
coiled_coil n/a 113 133
disorder n/a 134 135
coiled_coil n/a 140 160
disorder n/a 164 190
low_complexity n/a 171 182
Pfam Ribonuclease_3 238 331
disorder n/a 361 362
Pfam dsrm 370 435
low_complexity n/a 406 417
disorder n/a 451 471

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q02555. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MGSKVAGKKK TQNDNKLDNE NGSQQRENIN TKTLLKGNLK ISNYKYLEVI
50
51
QLEHAVTKLV ESYNKIIELS PNLVAYNEAV NNQDRVPVQI LPSLSRYQLK
100
101
LAAELKTLHD LKKDAILTEI TDYENEFDTE QKQPILQEIS KADMEKLEKL
150
151
EQVKREKREK IDVNVYENLN EKEDEEEDEG EDSYDPTKAG DIVKATKWPP
200
201
KLPEIQDLAI RARVFIHKST IKDKVYLSGS EMINAHNERL EFLGDSILNS
250
251
VMTLIIYNKF PDYSEGQLST LRMNLVSNEQ IKQWSIMYNF HEKLKTNFDL
300
301
KDENSNFQNG KLKLYADVFE AYIGGLMEDD PRNNLPKIRK WLRKLAKPVI
350
351
EEATRNQVAL EKTDKLDMNA KRQLYSLIGY ASLRLHYVTV KKPTAVDPNS
400
401
IVECRVGDGT VLGTGVGRNI KIAGIRAAEN ALRDKKMLDF YAKQRAAIPR
450
451
SESVLKDPSQ KNKKRKFSDT S                               
471
 

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Checksums:
CRC64:570294172E66A0DE
MD5:ae2dca1eb847df411a9ad4f18fbfbaaf

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
dsrm 370 - 435 1T4L B 370 - 435 Show 3D Structure View in InterPro
1T4N A 370 - 435 Show 3D Structure View in InterPro
1T4O A 370 - 435 Show 3D Structure View in InterPro
B 370 - 435 Show 3D Structure View in InterPro
2LBS B 370 - 435 Show 3D Structure View in InterPro
2LUP B 370 - 435 Show 3D Structure View in InterPro
2LUQ A 370 - 435 Show 3D Structure View in InterPro
4OOG C 370 - 435 Show 3D Structure View in InterPro
5T16 A 370 - 435 Show 3D Structure View in InterPro
B 370 - 435 Show 3D Structure View in InterPro
I 370 - 435 Show 3D Structure View in InterPro
J 370 - 435 Show 3D Structure View in InterPro
Ribonuclease_3 238 - 331 4OOG C 238 - 331 Show 3D Structure View in InterPro
5T16 A 238 - 331 Show 3D Structure View in InterPro
B 238 - 331 Show 3D Structure View in InterPro
I 238 - 331 Show 3D Structure View in InterPro
J 238 - 331 Show 3D Structure View in InterPro
RNase_3_N 44 - 151 4OOG A 44 - 151 Show 3D Structure View in InterPro
B 44 - 151 Show 3D Structure View in InterPro
44 - 152 5T16 C 44 - 152 Show 3D Structure View in InterPro
D 44 - 152 Show 3D Structure View in InterPro
E 44 - 152 Show 3D Structure View in InterPro
F 44 - 152 Show 3D Structure View in InterPro
K 44 - 152 Show 3D Structure View in InterPro
L 44 - 152 Show 3D Structure View in InterPro
M 44 - 152 Show 3D Structure View in InterPro
N 44 - 152 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;