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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: HBP1_RAT (Q62661)

Summary

This is the summary of UniProt entry HBP1_RAT (Q62661).

Description: HMG box-containing protein 1
Source organism: Rattus norvegicus (Rat) (NCBI taxonomy ID 10116)
Length: 513 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 1 2
disorder n/a 14 20
disorder n/a 31 38
disorder n/a 42 79
disorder n/a 84 116
disorder n/a 150 178
disorder n/a 180 182
Pfam AXH 214 337
low_complexity n/a 393 411
disorder n/a 424 430
Pfam HMG_box 433 500
disorder n/a 466 469
coiled_coil n/a 474 494
disorder n/a 482 488
disorder n/a 495 513

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q62661. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVWEVKTNQR PHAVQRLLLV MDERATGVSD SLELLQCNEN VPSSPGYNSC
50
51
DEHMELDDLP ELQAVQSDPT QSAIYQLSSD VSHQEYPRPS WSQNTSDIPE
100
101
NTHREDEVDW LTELANIATS PQSPLMQCSF YNRSSPVHII ATSKSLHSYA
150
151
RPPPVSSAKS GPAFPHDHWK EETPVRHERA NSESESGIFC MSSLSDDDDL
200
201
GWCNSWPSTV WHCFLKGTRL CFHKESKKEW QDVEDFARAA SCDEEEIQMG
250
251
THKGYGSDGL KLLSHEESVS FGESVLKLTF DPGTVEDGLL TVECKLDHPF
300
301
YVKNKGWSSF YPSLTVVQHG IPCCEIHIGD VCLPPGHPDA INFDDSGVFD
350
351
TFKSYDFTPM DSSAVYVLSS MARQRRASLS CGGPGTGQEF AGSEFSKSCG
400
401
SPGSSQLSSS SLYTKAVKSH SSGTVSATSP NKCKRPMNAF MLFAKKYRVE
450
451
YTQMYPGKDN RAISVILGDR WKKMKNEERR MYTLEAKALA EEQKRLNPDC
500
501
WKRKRTNSGS QQH                                        
513
 

Show the unformatted sequence.

Checksums:
CRC64:CC71A0918E793036
MD5:afe105b6c97a5029db890f996182fa41

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;