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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: NRPD1_ARATH (Q9LQ02)

Summary

This is the summary of UniProt entry NRPD1_ARATH (Q9LQ02).

Description: DNA-directed RNA polymerase IV subunit 1 EC=2.7.7.6
Source organism: Arabidopsis thaliana (Mouse-ear cress) (NCBI taxonomy ID 3702)
Length: 1453 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 33 35
disorder n/a 290 296
Pfam RNA_pol_Rpb1_2 315 473
Pfam RNA_pol_Rpb1_3 476 627
low_complexity n/a 525 536
Pfam RNA_pol_Rpb1_4 661 796
disorder n/a 775 783
coiled_coil n/a 1006 1026
disorder n/a 1291 1297
Pfam DUF3223 1347 1419
disorder n/a 1450 1452

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9LQ02. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP
50
51
NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
100
101
KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN
150
151
EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
200
201
LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT
250
251
RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
300
301
PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS
350
351
EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
400
401
LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG
450
451
DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
500
501
NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML
550
551
FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
600
601
LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA
650
651
EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
700
701
VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ
750
751
NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
800
801
LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV
850
851
RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
900
901
ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH
950
951
LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1000
1001
VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV
1050
1051
EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1100
1101
NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC
1150
1151
CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1200
1201
AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW
1250
1251
GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1300
1301
ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL
1350
1351
HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1400
1401
FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS
1450
1451
ENP                                                   
1453
 

Show the unformatted sequence.

Checksums:
CRC64:0128E71297295F1F
MD5:73bf92cfb54d4b5bb490e64614cae335

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;