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Structure: 2XB2

Summary

2xb2
PDB entry 2xb2: Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery
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PDB entry 2xb2

Crystal structure of the core mago-y14-eif4aiii-barentsz-upf3b assembly shows how the ejc is bridged to the nmd machinery

Experiment type: X-ray diffraction, resolution 3.40Å
Release date: 2011-07-13
Authors: Buchwald, G., Ebert, J., Basquin, C., Sauliere, J., Jayachandran, U., Bono, F., Le Hir, H., Conti, E.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 2xb2.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 62 228 P38919 62 228 DEAD (PF00270)
A 263 372 P38919 263 372 Helicase_C (PF00271)
C 5 146 P61326 5 146 Mago_nashi (PF02792)
D 75 145 Q9Y5S9 75 145 RRM_1 (PF00076)
S 169 246 O15234 169 246 Btz (PF09405)
T 169 248 O15234 169 248 Btz (PF09405)
X 62 228 P38919 62 228 DEAD (PF00270)
X 263 372 P38919 263 372 Helicase_C (PF00271)
Y 5 146 P61326 5 146 Mago_nashi (PF02792)
Z 75 145 Q9Y5S9 75 145 RRM_1 (PF00076)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 2xb2 in InterPro