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1  structure 1  species 0  interactions 33  sequences 26  architectures

Structure: 3JCR

Summary

3jcr
PDB entry 3jcr: 3D structure determination of the human*U4/U6.U5* tri-snRNP complex
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PDB entry 3jcr

3d structure determination of the human*u4/u6.u5* tri-snrnp complex

Experiment type: Electron Microscopy, resolution 7.00Å
Release date: 2018-07-18
Authors: Agafonov, D.E., Kastner, B., Dybkov, O., Hofele, R.V., Liu, W.T., Urlaub, H., Luhrmann, R., Stark, H.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 3jcr.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
2 5 72 Q9Y333 5 72 LSM (PF01423)
3 19 97 P62310 19 97 LSM (PF01423)
4 5 71 Q9Y4Z0 5 71 LSM (PF01423)
5 16 84 Q9Y4Y9 16 84 LSM (PF01423)
6 10 75 P62312 10 75 LSM (PF01423)
7 13 86 Q9UK45 13 86 LSM (PF01423)
8 4 72 O95777 4 72 LSM (PF01423)
A 61 209 Q6P2Q9 61 209 PRO8NT (PF08082)
A 395 801 Q6P2Q9 395 801 PROCN (PF08083)
A 986 1077 Q6P2Q9 986 1077 RRM_4 (PF10598)
A 1210 1343 Q6P2Q9 1210 1343 U5_2-snRNA_bdg (PF10597)
A 1442 1600 Q6P2Q9 1442 1600 U6-snRNA_bdg (PF10596)
A 1760 1989 Q6P2Q9 1760 1989 PRP8_domainIV (PF12134)
A 2099 2205 Q6P2Q9 2099 2205 JAB (PF01398)
A 2212 2314 Q6P2Q9 2212 2314 PROCT (PF08084)
B 127 440 Q15029 127 440 GTP_EFTU (PF00009)
B 489 566 Q15029 489 566 GTP_EFTU_D2 (PF03144)
B 584 656 Q15029 584 656 EFG_III (PF14492)
B 703 824 Q15029 703 824 EFG_IV (PF03764)
B 826 915 Q15029 826 915 EFG_C (PF00679)
C 259 363 O75643 259 363 Helicase_PWI (PF18149)
C 482 663 O75643 482 663 DEAD (PF00270)
C 703 860 O75643 703 860 Helicase_C (PF00271)
C 981 1285 O75643 981 1285 Sec63 (PF02889)
C 1329 1514 O75643 1329 1514 DEAD (PF00270)
C 1812 2123 O75643 1812 2123 Sec63 (PF02889)
D 56 94 Q96DI7 56 94 WD40 (PF00400)
D 99 137 Q96DI7 99 137 WD40 (PF00400)
D 141 180 Q96DI7 141 180 WD40 (PF00400)
D 186 221 Q96DI7 186 221 WD40 (PF00400)
D 224 263 Q96DI7 224 263 WD40 (PF00400)
D 271 313 Q96DI7 271 313 WD40 (PF00400)
D 317 353 Q96DI7 317 353 WD40 (PF00400)
E 4 136 P83876 4 136 DIM1 (PF02966)
F 415 616 Q9BUQ8 415 616 DEAD (PF00270)
F 650 759 Q9BUQ8 650 759 Helicase_C (PF00271)
G 710 736 O94906 710 736 TPR_8 (PF13181)
I 20 114 P55769 20 114 Ribosomal_L7Ae (PF01248)
J 99 330 Q8WWY3 99 330 Nop (PF01798)
K 544 673 O43395 544 673 DUF1115 (PF06544)
L 216 259 O43172 216 259 WD40 (PF00400)
L 263 309 O43172 263 309 WD40 (PF00400)
L 313 351 O43172 313 351 WD40 (PF00400)
L 397 435 O43172 397 435 WD40 (PF00400)
L 439 478 O43172 439 478 WD40 (PF00400)
L 482 520 O43172 482 520 WD40 (PF00400)
o 7 82 P14678 7 82 LSM (PF01423)
O 7 82 P14678 7 82 LSM (PF01423)
p 5 70 P62314 5 70 LSM (PF01423)
P 5 70 P62314 5 70 LSM (PF01423)
Q 33 111 P62316 33 111 LSM (PF01423)
q 33 111 P62316 33 111 LSM (PF01423)
R 8 73 P62318 8 73 LSM (PF01423)
r 8 73 P62318 8 73 LSM (PF01423)
S 23 89 P62304 23 89 LSM (PF01423)
s 23 89 P62304 23 89 LSM (PF01423)
T 9 74 P62306 9 74 LSM (PF01423)
t 9 74 P62306 9 74 LSM (PF01423)
u 7 72 P62308 7 72 LSM (PF01423)
U 7 72 P62308 7 72 LSM (PF01423)
V 123 186 Q53GS9 123 186 zf-UBP (PF02148)
V 225 552 Q53GS9 225 552 UCH (PF00443)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 3jcr in InterPro