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1  structure 1  species 0  interactions 36  sequences 9  architectures

Structure: 4PJO

Summary

4pjo
PDB entry 4pjo: Minimal U1 snRNP
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PDB entry 4pjo

Minimal u1 snrnp

Experiment type: X-ray diffraction, resolution 3.30Å
Release date: 2015-01-14
Authors: Kondo, Y., Oubridge, C., van Roon, A.M., Nagai, K.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 4pjo.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
a 8 73 P62318 8 73 LSM (PF01423)
A 8 73 P62318 8 73 LSM (PF01423)
b 7 82 P14678 7 82 LSM (PF01423)
B 7 82 P14678 7 82 LSM (PF01423)
c 5 70 P62314 5 70 LSM (PF01423)
C 5 70 P62314 5 70 LSM (PF01423)
D 33 111 P62316 33 111 LSM (PF01423)
d 33 111 P62316 33 111 LSM (PF01423)
e 23 89 P62304 23 89 LSM (PF01423)
E 23 89 P62304 23 89 LSM (PF01423)
f 9 74 P62306 9 74 LSM (PF01423)
F 9 74 P62306 9 74 LSM (PF01423)
G 7 72 P62308 7 72 LSM (PF01423)
g 7 72 P62308 7 72 LSM (PF01423)
k 3 59 P08621 3 59 U1snRNP70_N (PF12220)
K 3 59 P08621 3 59 U1snRNP70_N (PF12220)
l 2 38 P09234 2 38 zf-U1 (PF06220)
L 2 38 P09234 2 38 zf-U1 (PF06220)
m 2 38 P09234 2 38 zf-U1 (PF06220)
M 2 38 P09234 2 38 zf-U1 (PF06220)
n 3 59 P08621 3 59 U1snRNP70_N (PF12220)
N 6 58 P08621 6 58 U1snRNP70_N (PF12220)
O 8 73 P62318 8 73 LSM (PF01423)
o 8 73 P62318 8 73 LSM (PF01423)
p 7 82 P14678 7 82 LSM (PF01423)
P 7 82 P14678 7 82 LSM (PF01423)
q 5 70 P62314 5 70 LSM (PF01423)
Q 5 70 P62314 5 70 LSM (PF01423)
r 33 111 P62316 33 111 LSM (PF01423)
R 33 111 P62316 33 111 LSM (PF01423)
S 23 89 P62304 23 89 LSM (PF01423)
s 23 89 P62304 23 89 LSM (PF01423)
T 9 74 P62306 9 74 LSM (PF01423)
t 9 74 P62306 9 74 LSM (PF01423)
U 7 72 P62308 7 72 LSM (PF01423)
u 7 72 P62308 7 72 LSM (PF01423)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 4pjo in InterPro