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1  structure 1  species 0  interactions 50  sequences 20  architectures

Structure: 5MDX

Summary

5mdx
PDB entry 5mdx: Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana
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PDB entry 5mdx

Cryo-em structure of the psii supercomplex from arabidopsis thaliana

Experiment type: Electron Microscopy, resolution 5.30Å
Release date: 2019-04-24
Authors: van Bezouwen, L.S., Caffarri, S., Kale, R.S., Kouril, R., Thunnissen, A.M.W.H., Oostergetel, G.T., Boekema, E.J.
Species: Arabidopsis thaliana (Mouse-ear cress)

PDBprint

Below is the PDBprint for entry 5mdx.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
1 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
2 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
3 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
4 69 247 Q9LMQ2 69 247 Chloroa_b-bind (PF00504)
5 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
6 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
7 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
8 69 247 Q9LMQ2 69 247 Chloroa_b-bind (PF00504)
a 28 329 P83755 28 329 Photo_RC (PF00124)
A 36 329 P83755 36 329 Photo_RC (PF00124)
b 2 479 P56777 2 479 PSII (PF00421)
B 2 479 P56777 2 479 PSII (PF00421)
c 31 472 P56778 31 472 PSII (PF00421)
C 31 472 P56778 31 472 PSII (PF00421)
D 29 327 P56761 29 327 Photo_RC (PF00124)
d 29 327 P56761 29 327 Photo_RC (PF00124)
e 10 34 P56779 10 34 Cytochrom_B559 (PF00283)
E 10 34 P56779 10 34 Cytochrom_B559 (PF00283)
E 42 80 P56779 42 80 Cytochrom_B559a (PF00284)
e 42 80 P56779 42 80 Cytochrom_B559a (PF00284)
F 11 29 P62095 11 29 Cytochrom_B559 (PF00283)
f 11 29 P62095 11 29 Cytochrom_B559 (PF00283)
g 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
G 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
H 16 65 P56780 16 65 PsbH (PF00737)
h 16 65 P56780 16 65 PsbH (PF00737)
i 1 35 P62100 1 35 PsbI (PF02532)
I 1 35 P62100 1 35 PsbI (PF02532)
k 25 60 P56782 25 60 PsbK (PF02533)
K 25 60 P56782 25 60 PsbK (PF02533)
L 3 38 P60129 3 38 PsbL (PF02419)
l 3 38 P60129 3 38 PsbL (PF02419)
m 4 31 P62109 4 31 PsbM (PF05151)
M 4 31 P62109 4 31 PsbM (PF05151)
N 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
n 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
O 98 331 P23321 98 331 MSP (PF01716)
o 98 331 P23321 98 331 MSP (PF01716)
r 64 261 Q07473 64 261 Chloroa_b-bind (PF00504)
R 64 261 Q07473 64 261 Chloroa_b-bind (PF00504)
S 81 244 Q9XF89 81 244 Chloroa_b-bind (PF00504)
s 81 244 Q9XF89 81 244 Chloroa_b-bind (PF00504)
t 1 29 P61839 1 29 PsbT (PF01405)
T 1 29 P61839 1 29 PsbT (PF01405)
W 83 128 Q39194 83 128 PsbW (PF07123)
w 83 128 Q39194 83 128 PsbW (PF07123)
X 80 111 Q9SKI3 80 111 PsbX (PF06596)
x 80 111 Q9SKI3 80 111 PsbX (PF06596)
Y 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
y 66 234 P04778 66 234 Chloroa_b-bind (PF00504)
Z 4 61 P56790 4 61 Ycf9 (PF01737)
z 4 61 P56790 4 61 Ycf9 (PF01737)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5mdx in InterPro