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1  structure 1  species 0  interactions 73  sequences 73  architectures

Structure: 5MRE

Summary

PDB entry 5mre

Structure of the yeast mitochondrial ribosome - class b

Experiment type: Electron Microscopy, resolution 3.75Å
Release date: 2018-11-21
Authors: Desai, N., Brown, A., Amunts, A., Ramakrishnan, V.
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

PDBprint

Below is the PDBprint for entry 5mre.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
n/a 56 93 O14464 56 93 Ribosomal_L36 (PF00444)
1 188 339 Q06678 188 339 PBP (PF01161)
11 78 109 P32344 78 109 DUF1713 (PF08213)
2 34 143 P36527 34 143 MRP-L28 (PF09812)
22 42 97 P38783 42 97 IGR (PF09597)
3 35 131 P36526 35 131 MRP-L27 (PF09809)
33 187 259 P47141 187 259 Sod_Fe_C (PF02777)
4 40 91 Q06090 40 91 L51_S25_CI-B8 (PF05047)
44 134 217 P10662 134 217 Sod_Fe_C (PF02777)
5 303 369 P36516 303 369 dsrm (PF00035)
6 23 150 P36528 23 150 MRP-L46 (PF11788)
66 133 304 P53292 133 304 Bot1p (PF12298)
7 64 146 P25642 64 146 Img2 (PF05046)
8 123 229 Q02204 123 229 Ribosomal_L50 (PF10501)
88 47 402 P28817 47 402 ECH_2 (PF16113)
9 105 208 P36523 105 208 Ribonuclease_3 (PF00636)
a 24 192 P22354 24 192 MRP-L20 (PF12824)
AA 2 296 Q02950 2 296 Mit_ribos_Mrp51 (PF11709)
b 12 138 P23369 12 138 Mitoc_mL59 (PF18126)
B 132 208 P32611 132 208 Ribosomal_L2 (PF00181)
B 236 363 P32611 236 363 Ribosomal_L2_C (PF03947)
BB 188 383 P32902 188 383 Ribosomal_S2 (PF00318)
c 13 131 P14063 13 131 L31 (PF09784)
C 143 269 P31334 143 269 Ribosomal_L3 (PF00297)
CC 135 278 P02381 135 278 VAR1 (PF05316)
CC 264 398 P02381 264 398 VAR1 (PF05316)
d 23 107 Q06630 23 107 Mhr1 (PF12829)
D 58 275 P51998 58 275 Ribosomal_L4 (PF00573)
DD 103 150 P27929 103 150 S4 (PF01479)
E 132 186 P36519 132 186 Ribosomal_L5 (PF00281)
E 190 287 P36519 190 287 Ribosomal_L5_C (PF00673)
EE 144 209 P33759 144 209 Ribosomal_S5 (PF00333)
EE 222 293 P33759 222 293 Ribosomal_S5_C (PF03719)
F 43 117 P32904 43 117 Ribosomal_L6 (PF00347)
F 125 201 P32904 125 201 Ribosomal_L6 (PF00347)
FF 2 98 P28778 2 98 Ribosomal_S6 (PF01250)
GG 91 241 P47150 91 241 Ribosomal_S7 (PF00177)
H 14 135 Q12487 14 135 Ribosomal_L13 (PF00572)
HH 5 154 Q03799 5 154 Ribosomal_S8 (PF00410)
I 1 138 P35996 1 138 Ribosomal_L14 (PF00238)
II 158 278 P38120 158 278 Ribosomal_S9 (PF00380)
J 85 211 P36520 85 211 Ribosomal_L27A (PF00828)
JJ 44 141 Q03201 44 141 Ribosomal_S10 (PF00338)
K 43 179 P38064 43 179 Ribosomal_L16 (PF00252)
L 19 127 P22353 19 127 Ribosomal_L17 (PF01196)
L 129 238 P22353 129 238 Mrpl_C (PF18502)
LL 41 151 P53732 41 151 Ribosom_S12_S23 (PF00164)
M 38 158 P25626 38 158 Ribosomal_L19 (PF01245)
MM 4 110 P53937 4 110 Ribosomal_S13 (PF00416)
N 55 158 P40858 55 158 Ribosomal_L21p (PF00829)
NN 61 113 P10663 61 113 Ribosomal_S14 (PF00253)
O 165 268 P53881 165 268 Ribosomal_L22 (PF00237)
OO 156 237 P21771 156 237 Ribosomal_S15 (PF00312)
P 91 170 P32387 91 170 Ribosomal_L23 (PF00276)
PP 12 83 Q02608 12 83 Ribosomal_S16 (PF00886)
QQ 8 76 Q03246 8 76 Ribosomal_S17 (PF00366)
R 35 109 P12687 35 109 Ribosomal_L27 (PF01016)
R 135 371 P12687 135 371 Ribosomal_L27_C (PF18471)
RR 86 138 P40033 86 138 Ribosomal_S18 (PF01084)
S 70 129 P36525 70 129 Ribosomal_L28 (PF00830)
SS 10 85 P53733 10 85 Ribosomal_S19 (PF00203)
T 68 159 P36517 68 159 MRP-L47 (PF06984)
TT 105 158 P38175 105 158 Ribosomal_S21 (PF01165)
U 4 54 P20084 4 54 Ribosomal_L30 (PF00327)
UU 1 233 P40496 1 233 MRP-S25 (PF13741)
W 72 130 P25348 72 130 Ribosomal_L32p (PF01783)
WW 124 444 Q01163 124 444 DAP3 (PF10236)
XX 6 93 P53305 6 93 MRP-S33 (PF08293)
Y 62 105 Q04598 62 105 Ribosomal_L34 (PF00468)
YY 171 299 Q03976 171 299 MRP-S28 (PF10213)
Z 55 112 P53921 55 112 Ribosomal_L35p (PF01632)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5mre in InterPro