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1  structure 1  species 0  interactions 3  sequences 1  architecture

Structure: 5OXS

Summary

5oxs
PDB entry 5oxs: Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide
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PDB entry 5oxs

Crystal structure of human lung surfactant protein d trimeric fragment with bound ligand salmonella enterica minnesota r5 oligosaccharide

Experiment type: X-ray diffraction, resolution 1.65Å
Release date: 2020-07-29
Authors: Shrive, A.K., Greenhough, T.J.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 5oxs.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 204 249 P35247 224 269 Surfac_D-trimer (PF09006)
A 251 355 P35247 271 375 Lectin_C (PF00059)
B 203 204 P35247 223 224 Collagen (PF01391)
B 204 249 P35247 224 269 Surfac_D-trimer (PF09006)
B 251 355 P35247 271 375 Lectin_C (PF00059)
C 203 204 P35247 223 224 Collagen (PF01391)
C 204 249 P35247 224 269 Surfac_D-trimer (PF09006)
C 251 355 P35247 271 375 Lectin_C (PF00059)

Note: This mapping was provided by the PDBe group.

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View Pfam families and other data mapped to the structure of PDB entry 5oxs in InterPro