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1  structure 1  species 0  interactions 46  sequences 32  architectures

Structure: 5VFT

Summary

5vft
PDB entry 5vft: Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome
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PDB entry 5vft

Nucleotide-driven triple-state remodeling of the aaa-atpase channel in the activated human 26s proteasome

Experiment type: Electron Microscopy, resolution 7.00Å
Release date: 2018-07-18
Authors: Zhu, Y., Wang, W.L., Yu, D., Ouyang, Q., Lu, Y., Mao, Y.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 5vft.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 212 345 P35998 212 345 AAA (PF00004)
a 231 335 Q9UNM6 231 335 PCI (PF01399)
A 367 411 P35998 367 411 AAA_lid_3 (PF17862)
b 6 116 P55036 6 116 VWA_2 (PF13519)
B 109 163 P62191 109 163 Prot_ATP_ID_OB (PF16450)
B 222 355 P62191 222 355 AAA (PF00004)
B 377 421 P62191 377 421 AAA_lid_3 (PF17862)
c 26 139 O00487 26 139 JAB (PF01398)
C 73 128 P62195 73 128 Prot_ATP_ID_OB (PF16450)
c 173 307 O00487 173 307 MitMem_reg (PF13012)
C 186 319 P62195 186 319 AAA (PF00004)
C 341 385 P62195 341 385 AAA_lid_3 (PF17862)
D 89 144 P43686 89 144 Prot_ATP_ID_OB (PF16450)
d 93 234 P48556 186 327 CSN8_PSD8_EIF3K (PF10075)
D 202 335 P43686 202 335 AAA (PF00004)
D 357 401 P43686 357 401 AAA_lid_3 (PF17862)
e 5 62 P60896 5 62 DSS1_SEM1 (PF05160)
E 56 112 P62333 56 112 Prot_ATP_ID_OB (PF16450)
E 170 303 P62333 170 303 AAA (PF00004)
E 325 369 P62333 325 369 AAA_lid_3 (PF17862)
f 70 354 Q13200 70 354 RPN1_RPN2_N (PF17781)
F 90 165 P17980 90 165 Prot_ATP_ID_OB (PF16450)
F 223 356 P17980 223 356 AAA (PF00004)
F 378 422 P17980 378 422 AAA_lid_3 (PF17862)
f 443 479 Q13200 443 479 PC_rep (PF01851)
f 480 514 Q13200 480 514 PC_rep (PF01851)
g 9 31 P60900 9 31 Proteasome_A_N (PF10584)
G 9 31 P60900 9 31 Proteasome_A_N (PF10584)
G 32 220 P60900 32 220 Proteasome (PF00227)
g 32 220 P60900 32 220 Proteasome (PF00227)
H 6 28 P25787 6 28 Proteasome_A_N (PF10584)
h 6 28 P25787 6 28 Proteasome_A_N (PF10584)
H 29 213 P25787 29 213 Proteasome (PF00227)
h 29 213 P25787 29 213 Proteasome (PF00227)
i 5 27 P25789 5 27 Proteasome_A_N (PF10584)
I 5 27 P25789 5 27 Proteasome_A_N (PF10584)
I 28 216 P25789 28 216 Proteasome (PF00227)
i 28 216 P25789 28 216 Proteasome (PF00227)
J 3 25 O14818 3 25 Proteasome_A_N (PF10584)
j 3 25 O14818 3 25 Proteasome_A_N (PF10584)
j 26 211 O14818 26 211 Proteasome (PF00227)
J 26 211 O14818 26 211 Proteasome (PF00227)
k 8 30 P28066 8 30 Proteasome_A_N (PF10584)
K 8 30 P28066 8 30 Proteasome_A_N (PF10584)
K 31 220 P28066 31 220 Proteasome (PF00227)
k 31 220 P28066 31 220 Proteasome (PF00227)
L 6 28 P25786 6 28 Proteasome_A_N (PF10584)
l 6 28 P25786 6 28 Proteasome_A_N (PF10584)
L 29 215 P25786 29 215 Proteasome (PF00227)
l 29 215 P25786 29 215 Proteasome (PF00227)
M 7 29 P25788 8 30 Proteasome_A_N (PF10584)
m 7 29 P25788 8 30 Proteasome_A_N (PF10584)
m 30 216 P25788 31 217 Proteasome (PF00227)
M 30 216 P25788 31 217 Proteasome (PF00227)
n 1 179 P28072 35 213 Proteasome (PF00227)
N 1 179 P28072 35 213 Proteasome (PF00227)
O 1 178 Q99436 44 221 Proteasome (PF00227)
o 1 178 Q99436 44 221 Proteasome (PF00227)
O 192 220 Q99436 235 263 Pr_beta_C (PF12465)
o 192 220 Q99436 235 263 Pr_beta_C (PF12465)
P 5 190 P49720 5 190 Proteasome (PF00227)
p 5 190 P49720 5 190 Proteasome (PF00227)
q 3 183 P49721 3 183 Proteasome (PF00227)
Q 3 183 P49721 3 183 Proteasome (PF00227)
R 1 179 P28074 60 238 Proteasome (PF00227)
r 1 179 P28074 60 238 Proteasome (PF00227)
S 6 198 P20618 34 226 Proteasome (PF00227)
s 6 198 P20618 34 226 Proteasome (PF00227)
t 5 192 P28070 50 237 Proteasome (PF00227)
T 5 192 P28070 50 237 Proteasome (PF00227)
U 441 474 Q99460 441 474 PC_rep (PF01851)
U 476 510 Q99460 476 510 PC_rep (PF01851)
U 511 545 Q99460 511 545 PC_rep (PF01851)
U 599 692 Q99460 599 692 HEAT_2 (PF13646)
U 786 917 Q99460 786 917 RPN2_C (PF18004)
V 358 462 O43242 358 462 PCI (PF01399)
V 465 497 O43242 465 497 Rpn3_C (PF08375)
W 300 417 O00232 300 417 PCI (PF01399)
W 422 454 O00232 422 454 RPN5_C (PF18098)
X 342 389 O00231 342 389 PCI (PF01399)
X 393 419 O00231 393 419 RPN6_C_helix (PF18503)
Y 66 239 Q15008 66 239 RPN7 (PF10602)
Y 254 358 Q15008 254 358 PCI (PF01399)
Z 5 118 P51665 5 118 JAB (PF01398)
Z 166 277 P51665 166 277 MitMem_reg (PF13012)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5vft in InterPro