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1  structure 1  species 0  interactions 45  sequences 45  architectures

Structure: 6LQM

Summary

PDB entry 6lqm

Cryo-em structure of a pre-60s ribosomal subunit - state c

Experiment type: Electron Microscopy, resolution 3.09Å
Release date: 2020-08-26
Authors: Liang, X., Zuo, M., Zhang, Y., Li, N., Ma, C., Dong, M., Gao, N.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 6lqm.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
3 153 246 Q96D46 153 246 NMD3 (PF04981)
6 4 204 P56537 4 204 eIF-6 (PF01912)
a 3 146 P84098 3 146 Ribosomal_L19e (PF01280)
A 18 212 P62906 18 212 Ribosomal_L1 (PF00687)
B 2 375 P39023 2 375 Ribosomal_L3 (PF00297)
b 7 130 Q02543 7 130 Ribosomal_L18A (PF01775)
c 2 101 P46778 2 101 Ribosomal_L21e (PF01157)
C 3 42 P47914 3 42 Ribosomal_L29e (PF01779)
d 17 117 P35268 17 117 Ribosomal_L22e (PF01776)
D 22 263 P36578 22 263 Ribosomal_L4 (PF00573)
D 275 349 P36578 275 349 Ribos_L4_asso_C (PF14374)
E 13 106 P62888 13 106 Ribosomal_L7Ae (PF01248)
e 20 140 P62829 20 140 Ribosomal_L14 (PF00238)
f 1 61 P83731 1 61 Ribosomal_L24e (PF01246)
F 2 96 P49207 2 96 Ribosomal_L34e (PF01199)
g 40 67 P62750 40 67 Ribosomal_L23eN (PF03939)
g 75 148 P62750 75 148 Ribosomal_L23 (PF00276)
G 122 216 P62424 122 216 Ribosomal_L7Ae (PF01248)
H 7 63 P42766 7 63 Ribosomal_L29 (PF00831)
h 8 122 P61254 8 122 Ribosomal_L26 (PF16906)
h 51 97 P61254 51 97 KOW (PF00467)
i 7 40 P61353 7 40 KOW (PF00467)
I 12 87 P32969 12 87 Ribosomal_L6 (PF00347)
i 52 136 P61353 52 136 Ribosomal_L27e (PF01777)
I 99 178 P32969 99 178 Ribosomal_L6 (PF00347)
J 32 166 Q96L21 32 166 Ribosomal_L16 (PF00252)
K 4 99 Q9Y3U8 4 99 Ribosomal_L36e (PF01158)
l 5 120 P46779 5 120 Ribosomal_L28e (PF01778)
L 26 145 P46776 26 145 Ribosomal_L27A (PF00828)
M 2 54 P61927 2 54 Ribosomal_L37e (PF01907)
m 11 90 P62917 11 90 Ribosomal_L2 (PF00181)
m 97 234 P62917 97 234 Ribosomal_L2_C (PF03947)
N 10 63 P62913 10 63 Ribosomal_L5 (PF00281)
N 67 165 P62913 67 165 Ribosomal_L5_C (PF00673)
O 2 69 P63173 2 69 Ribosomal_L38e (PF01781)
P 9 50 P62891 9 50 Ribosomal_L39 (PF00832)
Q 8 187 P26373 8 187 Ribosomal_L13e (PF01294)
r 14 176 P46777 14 176 Ribosomal_L5e (PF17144)
R 79 125 P62987 79 125 Ribosomal_L40e (PF01020)
r 236 289 P46777 236 289 Ribosomal_L18_c (PF14204)
S 46 120 P50914 46 120 Ribosomal_L14e (PF01929)
t 17 124 P62910 17 124 Ribosomal_L32e (PF01655)
T 19 100 P62899 19 100 Ribosomal_L31e (PF01198)
U 2 191 P61313 2 191 Ribosomal_L15e (PF00827)
u 5 104 P18077 5 104 Ribosomal_L35Ae (PF01247)
V 4 111 P40429 4 111 Ribosomal_L13 (PF00572)
v 42 95 Q02878 42 95 Ribosomal_L6e_N (PF03868)
v 181 288 Q02878 181 288 Ribosomal_L6e (PF01159)
W 17 94 P83881 17 94 Ribosomal_L44 (PF00935)
w 24 85 P18124 24 85 Ribosomal_L30_N (PF08079)
w 90 140 P18124 90 140 Ribosomal_L30 (PF00327)
X 4 88 P61513 4 88 Ribosomal_L37ae (PF01780)
Y 17 151 P18621 17 151 Ribosomal_L22 (PF00237)
Z 2 188 Q07020 2 188 Ribosomal_L18 (PF17135)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 6lqm in InterPro