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1  structure 9  species 0  interactions 50  sequences 50  architectures

Structure: 6Q97

Summary

PDB entry 6q97

Structure of tmrna smpb bound in a site of e. coli 70s ribosome

Experiment type: Electron Microscopy, resolution 3.90Å
Release date: 2019-03-13
Authors: Rae, C.D.
Species: Escherichia coli (strain K12)

PDBprint

Below is the PDBprint for entry 6q97.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
5 14 157 P0A832 14 157 SmpB (PF01668)
a 1 65 P0A7M9 1 65 Ribosomal_L31 (PF01197)
C 4 185 P60438 4 185 Ribosomal_L3 (PF00297)
c 7 53 P0A7N9 7 53 Ribosomal_L33 (PF00471)
d 1 44 P0A7P5 1 44 Ribosomal_L34 (PF00468)
D 12 199 P60723 12 199 Ribosomal_L4 (PF00573)
e 2 62 P0A7Q1 2 62 Ribosomal_L35p (PF01632)
E 24 80 P62399 24 80 Ribosomal_L5 (PF00281)
E 84 177 P62399 84 177 Ribosomal_L5_C (PF00673)
F 11 82 P0AG55 11 82 Ribosomal_L6 (PF00347)
F 90 165 P0AG55 90 165 Ribosomal_L6 (PF00347)
G 1 47 P0A7R1 1 47 Ribosomal_L9_N (PF01281)
g 9 224 P0A7V0 9 224 Ribosomal_S2 (PF00318)
G 63 148 P0A7R1 63 148 Ribosomal_L9_C (PF03948)
H 3 101 P0A7J3 3 101 Ribosomal_L10 (PF00466)
h 38 111 P0A7V3 38 111 KH_2 (PF07650)
h 120 202 P0A7V3 120 202 Ribosomal_S3_C (PF00189)
i 3 95 P0A7V8 3 95 Ribosomal_S4 (PF00163)
I 8 66 P0A7J7 9 67 Ribosomal_L11_N (PF03946)
I 71 139 P0A7J7 72 140 Ribosomal_L11 (PF00298)
i 96 143 P0A7V8 96 143 S4 (PF01479)
j 11 75 P0A7W1 11 75 Ribosomal_S5 (PF00333)
j 87 157 P0A7W1 87 157 Ribosomal_S5_C (PF03719)
K 1 123 P0ADY3 1 123 Ribosomal_L14 (PF00238)
k 3 91 P02358 3 91 Ribosomal_S6 (PF01250)
l 2 149 P02359 2 149 Ribosomal_S7 (PF00177)
L 27 143 P02413 27 143 Ribosomal_L27A (PF00828)
M 4 131 P0ADY7 4 131 Ribosomal_L16 (PF00252)
m 5 130 P0A7W7 5 130 Ribosomal_S8 (PF00410)
N 20 116 P0AG44 20 116 Ribosomal_L17 (PF01196)
O 3 117 P0C018 3 117 Ribosomal_L18p (PF00861)
o 7 101 P0A7R5 7 101 Ribosomal_S10 (PF00338)
P 3 113 P0A7K6 3 113 Ribosomal_L19 (PF01245)
p 19 128 P0A7R9 19 128 Ribosomal_S11 (PF00411)
Q 3 109 P0A7L3 3 109 Ribosomal_L20 (PF00453)
R 1 101 P0AG48 1 101 Ribosomal_L21p (PF00829)
s 47 100 P0AG59 47 100 Ribosomal_S14 (PF00253)
t 8 88 P0ADZ4 8 88 Ribosomal_S15 (PF00312)
T 9 94 P0ADZ0 9 94 Ribosomal_L23 (PF00276)
U 7 37 P60624 7 37 KOW (PF00467)
U 39 103 P60624 39 103 ribosomal_L24 (PF17136)
V 4 91 P68919 4 91 Ribosomal_L25p (PF01386)
v 10 77 P0AG63 10 77 Ribosomal_S17 (PF00366)
W 10 82 P0A7L8 10 82 Ribosomal_L27 (PF01016)
w 17 68 P0A7T7 17 68 Ribosomal_S18 (PF01084)
X 3 62 P0A7M2 3 62 Ribosomal_L28 (PF00830)
y 2 84 P0A7U7 2 84 Ribosomal_S20p (PF01649)
z 3 57 P68679 3 57 Ribosomal_S21 (PF01165)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 6q97 in InterPro