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1  structure 1  species 0  interactions 86  sequences 81  architectures

Structure: 6ZSE

Summary

PDB entry 6zse

Human mitochondrial ribosome in complex with mrna, a/p-trna and p/e-trna

Experiment type: Electron Microscopy, resolution 5.00Å
Release date: 2020-09-16
Authors: Aibara, S., Singh, V., Modelska, A., Amunts, A.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 6zse.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
n/a 79 136 Q9BYC8 79 136 Ribosomal_L32p (PF01783)
1 13 60 O75394 13 60 Ribosomal_L33 (PF00471)
2 49 92 Q9BQ48 49 92 Ribosomal_L34 (PF00468)
3 102 162 Q9NZE8 102 162 Ribosomal_L35p (PF01632)
4 66 103 Q9P0J6 66 103 Ribosomal_L36 (PF00444)
5 190 420 Q9BZE1 190 420 PDCD9 (PF07147)
6 184 312 Q96DV4 184 312 PBP (PF01161)
8 60 198 Q9NQ50 60 198 MRP-L28 (PF09812)
9 14 127 Q8IXM3 14 127 MRP-L27 (PF09809)
a 47 142 Q9Y6G3 47 142 MRP-S32 (PF10210)
A0 61 187 P82930 61 187 MRP-S34 (PF16053)
A1 141 248 P82673 141 248 MRP-S28 (PF10213)
A2 45 79 Q96BP2 45 79 CHCH (PF06747)
A3 128 159 Q9NWT8 128 159 DUF1713 (PF08213)
A4 256 305 Q96EY7 254 303 PPR_2 (PF13041)
A4 347 386 Q96EY7 345 384 PPR_3 (PF13812)
AB 84 186 Q9Y399 84 186 Ribosomal_S2 (PF00318)
AB 184 260 Q9Y399 184 260 Ribosomal_S2 (PF00318)
AC 36 167 Q96EL2 36 167 MRP-S24 (PF14955)
AD 218 283 P82675 218 283 Ribosomal_S5 (PF00333)
AD 296 366 P82675 296 366 Ribosomal_S5_C (PF03719)
AE 3 95 P82932 3 95 Ribosomal_S6 (PF01250)
AF 69 234 Q9Y2R9 69 234 Ribosomal_S7 (PF00177)
AG 274 395 P82933 274 395 Ribosomal_S9 (PF00380)
AH 77 173 P82664 77 173 Ribosomal_S10 (PF00338)
AI 84 193 P82912 84 193 Ribosomal_S11 (PF00411)
AJ 42 138 O15235 42 138 Ribosom_S12_S23 (PF00164)
AK 74 127 O60783 74 127 Ribosomal_S14 (PF00253)
AL 107 188 P82914 107 188 Ribosomal_S15 (PF00312)
AM 23 84 Q9Y3D3 23 84 Ribosomal_S16 (PF00886)
AN 15 83 Q9Y2R5 15 83 Ribosomal_S17 (PF00366)
AO 111 163 Q9Y676 111 163 Ribosomal_S18 (PF01084)
AP 68 120 Q9Y3D5 68 120 Ribosomal_S18 (PF01084)
AQ 11 64 P82921 11 64 Ribosomal_S21 (PF01165)
AR 68 309 P82650 68 309 MRP-S22 (PF10245)
AS 2 130 Q9Y3D9 2 130 MRP-S23 (PF10484)
AT 44 95 P82663 44 95 L51_S25_CI-B8 (PF05047)
AU 28 197 Q9BYN8 28 197 MRP-S26 (PF14943)
AV 31 400 Q92552 31 400 MRP-S27 (PF10037)
AW 77 173 Q9Y2Q9 77 173 MRP-S35 (PF10246)
AX 99 394 P51398 99 394 DAP3 (PF10236)
AY 276 388 Q92665 276 388 MRP-S31 (PF15433)
AZ 6 90 Q9Y291 6 90 MRP-S33 (PF08293)
b 43 95 Q8N983 43 95 L51_S25_CI-B8 (PF05047)
d 118 266 Q9BRJ2 118 266 Tim44 (PF04280)
e 45 155 Q9H2W6 45 155 MRP-L46 (PF11788)
f 92 187 Q96GC5 92 187 Ribosomal_S10 (PF00338)
g 82 166 Q13405 82 166 Img2 (PF05046)
h 60 155 Q8N5N7 60 155 Ribosomal_L50 (PF10501)
i 38 126 Q4U2R6 38 126 MRP-L51 (PF10244)
k 20 71 Q96EL3 20 71 MRP_L53 (PF10780)
l 62 125 Q6P161 62 125 Ribosomal_L37 (PF08561)
m 35 94 Q7Z7F7 35 95 Mitoc_L55 (PF09776)
o 13 101 Q9BQC6 13 101 MRP-63 (PF14978)
p 70 193 Q14197 71 193 RF-1 (PF00472)
q 25 188 Q8TAE8 25 188 CR6_interact (PF10147)
r 77 128 Q9NVS2 77 128 Ribosomal_S18 (PF01084)
s 41 429 Q9NP92 41 429 PDCD9 (PF07147)
t1 2 30 P52815 63 91 Ribosomal_L12_N (PF16320)
t2 2 30 P52815 63 91 Ribosomal_L12_N (PF16320)
t3 2 30 P52815 63 91 Ribosomal_L12_N (PF16320)
t4 2 29 P52815 63 90 Ribosomal_L12_N (PF16320)
t5 2 29 P52815 63 90 Ribosomal_L12_N (PF16320)
t6 2 28 P52815 63 89 Ribosomal_L12_N (PF16320)
XD 84 165 Q5T653 84 165 Ribosomal_L2 (PF00181)
XD 177 295 Q5T653 177 295 Ribosomal_L2_C (PF03947)
XE 45 118 P09001 45 118 Ribosomal_L3 (PF00297)
XE 113 340 P09001 113 340 Ribosomal_L3 (PF00297)
XF 80 272 Q9BYD3 80 272 Ribosomal_L4 (PF00573)
XH 94 140 Q9BYD2 94 140 Ribosomal_L9_N (PF01281)
XI 81 171 Q7Z7H8 81 171 Ribosomal_L10 (PF00466)
XJ 20 78 Q9Y3B7 20 78 Ribosomal_L11_N (PF03946)
XJ 83 155 Q9Y3B7 83 155 Ribosomal_L11 (PF00298)
XK 16 134 Q9BYD1 16 134 Ribosomal_L13 (PF00572)
XL 31 145 Q6P1L8 31 145 Ribosomal_L14 (PF00238)
XM 45 175 Q9P015 45 175 Ribosomal_L27A (PF00828)
XN 57 190 Q9NX20 57 190 Ribosomal_L16 (PF00252)
XO 28 126 Q9NRX2 28 126 Ribosomal_L17 (PF01196)
XQ 93 198 P49406 93 198 Ribosomal_L19 (PF01245)
XR 11 116 Q9BYC9 11 116 Ribosomal_L20 (PF00453)
XS 95 198 Q7Z2W9 95 198 Ribosomal_L21p (PF00829)
XT 75 179 E7ESL0 75 179 Ribosomal_L22 (PF00237)
XU 28 107 Q16540 28 107 Ribosomal_L23 (PF00276)
XV 58 88 Q96A35 58 88 KOW (PF00467)
XV 91 154 Q96A35 91 154 ribosomal_L24 (PF17136)
XW 38 114 Q9P0M9 38 114 Ribosomal_L27 (PF01016)
XX 76 138 Q13084 76 138 Ribosomal_L28 (PF00830)
XY 64 149 Q9HD33 64 149 MRP-L47 (PF06984)
XZ 67 117 Q8TCC3 67 117 Ribosomal_L30 (PF00327)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 6zse in InterPro