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Structure: 6CDI


PDB entry 6cdi

Cryo-em structure at 3.6 a resolution of vaccine-elicited antibody vfp16.02 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122

Experiment type: Electron Microscopy, resolution 3.60Å
Release date: 2020-07-29
Authors: Acharya, P., Xu, K., Liu, K., Carragher, B., Potter, C.S., Kwong, P.D.


Below is the PDBprint for entry 6cdi.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
2 34 152 Q2N0S5 33 143 GP120 (PF00516)
2 141 505 Q2N0S5 140 502 GP120 (PF00516)
A 530 664 Q2N0S7 527 661 GP41 (PF00517)
C 34 152 Q2N0S5 33 143 GP120 (PF00516)
C 141 505 Q2N0S5 140 502 GP120 (PF00516)
c 530 664 Q2N0S7 527 661 GP41 (PF00517)
d 34 152 Q2N0S5 33 143 GP120 (PF00516)
d 141 505 Q2N0S5 140 502 GP120 (PF00516)
D 530 664 Q2N0S7 527 661 GP41 (PF00517)

Note: This mapping was provided by the PDBe group.

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View Pfam families and other data mapped to the structure of PDB entry 6cdi in InterPro